Ka-Shu Wong, Gane: search on Z-Library

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1

Sequencing and Analyzing the Transcriptomes of a Thousand Species Across the Tree of Life for Green Plants

Wong, Gane Ka-Shu, Soltis, Douglas E., Leebens-Mack, Jim, Wickett, Norman J., Barker, Michael S., de Peer, Yves Van, Graham, Sean W., Melkonian, Michael

Journal:

Annual Review of Plant Biology

Year:

2020

File:

PDF, 1.33 MB

2020

2

Evolution of fruit development genes in flowering plants

PabÃ³n-Mora, Natalia, Wong, Gane Ka-Shu, Ambrose, Barbara A.

Journal:

Frontiers in Plant Science

Year:

2014

Language:

english

File:

PDF, 3.07 MB

english, 2014

3

Cyclotide discovery in Gentianales revisited-identification and characterization of cyclic cystine-knot peptides and their phylogenetic distribution in Rubiaceae plants

Koehbach, Johannes, Attah, Alfred F., Berger, Andreas, Hellinger, Roland, Kutchan, Toni M., Carpenter, Eric J., Rolf, Megan, Sonibare, Mubo A., Moody, Jones O., Wong, Gane Ka-Shu, Dessein, Steven, Gre

Journal:

Year:

2013

Language:

english

File:

PDF, 1.01 MB

english, 2013

4

Peptidomics of circular cysteine-rich plant peptides – Analysis of the diversity of cyclotides from Viola tricolor by transcriptome- and proteome-mining

Hellinger, Roland, Koehbach, Johannes, Soltis, Douglas E, Carpenter, Eric J, Wong, Gane Ka-Shu, Gruber, Christian W

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 1.45 MB

english, 2015

5

Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N 2 but may denitrify

Dijkhuizen, Laura W., Brouwer, Paul, Bolhuis, Henk, Reichart, Gert-Jan, Koppers, Nils, Huettel, Bruno, Bolger, Anthony M., Li, Fay-Wei, Cheng, Shifeng, Liu, Xin, Wong, Gane Ka-Shu, Pryer, Kathleen, We

Journal:

New Phytologist

Year:

2017

Language:

english

File:

PDF, 1.47 MB

english, 2017

6

Comparing the whole-genome-shotgun and map-based sequences of the rice genome

Jun Yu, Peixiang Ni, Gane Ka-Shu Wong

Journal:

Trends in Plant Science

Year:

2006

Language:

english

File:

PDF, 323 KB

english, 2006

7

Terpene Biosynthesis in Red Algae is Catalyzed by Microbial Type but not Typical Plant Terpene Synthases

Wei, Guo, Jia, Qidong, Chen, Xinlu, Köllner, Tobias G, Bhattacharya, Debashish, Wong, Gane Ka-Shu, Gershenzon, Jonathan, Chen, Feng

Journal:

PLANT PHYSIOLOGY

Year:

2018

Language:

english

File:

PDF, 1.52 MB

english, 2018

8

A draft sequence of the rice (Oryza sativassp.indica) genome

Jun Yu, Songnian Hu, Jun Wang, Songgang Li, Ka-Shu Gane Wong, Bin Liu, Yajun Deng, Li Dai, Yan Zhou, Xiuqing Zhang, Mengliang Cao, Jing Liu, Jiandong Sun, Jiabin Tang, Yanjiong Chen, Xiaobing Huang, W

Journal:

Chinese Science Bulletin

Year:

2001

Language:

english

File:

PDF, 356 KB

english, 2001

9

Opinion: Vertebrate gene predictions and the problem of large genes

Wang, Jun, Li, ShengTing, Zhang, Yong, Zheng, HongKun, Xu, Zhao, Ye, Jia, Yu, Jun, Wong, Gane Ka-Shu

Journal:

Nature Reviews Genetics

Year:

2003

Language:

english

File:

PDF, 288 KB

english, 2003

10

Phylogeny and evolutionary history of glycogen synthase kinase 3/SHAGGY-like kinase genes in land plants

Xinshuai Qi, André S Chanderbali, Gane Ka-Shu Wong…

Journal:

BMC Evolutionary Biology

Year:

2013

Language:

english

File:

PDF, 3.64 MB

english, 2013

11

Gains and losses of metabolic function inferred from a phylotranscriptomic analysis of algae

Goh, Falicia Qi Yun, Jeyakani, Justin, Tipthara, Phornpimon, Cazenave-Gassiot, Amaury, Ghosh, Rajoshi, Bogard, Nicholas, Yeo, Zhenxuan, Wong, Gane Ka-Shu, Melkonian, Michael, Wenk, Markus R., Clarke,

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 1.06 MB

english, 2019

12

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

Ka-Shu Wong, Gane, Liu, Bin, Wang, Jun, Zhang, Yong, Yang, Xu, Zhang, Zengjin, Meng, Qingshun, Zhou, Jun, Li, Dawei, Zhang, Jingjing

Journal:

Year:

2004

Language:

english

File:

PDF, 299 KB

english, 2004

13

Wild soybean roots depend on specific transcription factors and oxidation reduction related genesin response to alkaline stress

DuanMu, Huizi, Wang, Yang, Bai, Xi, Cheng, Shufei, Deyholos, Michael K., Wong, Gane Ka-Shu, Li, Dan, Zhu, Dan, Li, Ran, Yu, Yang, Cao, Lei, Chen, Chao, Zhu, Yanming

Journal:

Functional & Integrative Genomics

Year:

2015

Language:

english

File:

PDF, 1021 KB

english, 2015

14

Correlation Between Ka/Ks and Ks is Related to Substitution Model and Evolutionary Lineage

Jun Li, Zhang Zhang, Søren Vang, Jun Yu, Gane Ka-Shu Wong, Jun Wang

Journal:

Journal of Molecular Evolution

Year:

2009

Language:

english

File:

PDF, 610 KB

english, 2009

15

Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing

Yang, Ya, Moore, Michael J., Brockington, Samuel F., Soltis, Douglas E., Wong, Gane Ka-Shu, Carpenter, Eric J., Zhang, Yong, Chen, Li, Yan, Zhixiang, Xie, Yinlong, Sage, Rowan F., Covshoff, Sarah, Hib

Journal:

Molecular Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 476 KB

english, 2015

16

Insights into the evolution of hydroxyproline rich glycoproteins from 1000 plant transcriptomes

Johnson, Kim L, Cassin, Andrew M, Lonsdale, Andrew, Wong, Gane Ka-Shu, Soltis, Doug, Miles, Nicholas W, Melkonian, Michael, Melkonian, Barbara, Deyholos, Michael K., Leebens-Mack, James, Rothfels, Car

Journal:

PLANT PHYSIOLOGY

Year:

2017

Language:

english

File:

PDF, 1.10 MB

english, 2017

17

Positive correlation between recombination rate and nucleotide diversity is shown under domestication selection in the chicken genome

Lin Fang, Jia Ye, Ning Li, Yong Zhang, SongGang Li, Gane Ka-Shu Wong, Jun Wang

Journal:

Chinese Science Bulletin

Year:

2008

Language:

english

File:

PDF, 1.47 MB

english, 2008

18

Functional and topological diversity of LOV domain photoreceptors

Glantz, Spencer T., Carpenter, Eric J., Melkonian, Michael, Gardner, Kevin H., Boyden, Edward S., Wong, Gane Ka-Shu, Chow, Brian Y.

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 7.16 MB

english, 2016

19

CYP79 P450 monooxygenases in gymnosperms: CYP79A118 is associated with the formation of taxiphyllin in Taxus baccata

Luck, Katrin, Jia, Qidong, Huber, Meret, Handrick, Vinzenz, Wong, Gane Ka-Shu, Nelson, David R., Chen, Feng, Gershenzon, Jonathan, Köllner, Tobias G.

Journal:

Plant Molecular Biology

Year:

2017

Language:

english

File:

PDF, 2.98 MB

english, 2017

20

The trans-kingdom battle between donor and recipient gut microbiome influences fecal microbiota transplantation outcome

Kazemian, Negin, Ramezankhani, Milad, Sehgal, Aarushi, Khalid, Faizan Muhammad, Kalkhoran, Amir Hossein Zeinali, Narayan, Apurva, Wong, Gane Ka-Shu, Kao, Dina, Pakpour, Sepideh

Journal:

Scientific Reports

Year:

2020

File:

PDF, 2.57 MB

2020

21

KaKs_Calculator: Calculating Ka and Ks Through Model Selection and Model Averaging

Zhang Zhang, Jun Li, Xiao-Qian Zhao, Jun Wang, Gane Ka-Shu Wong, Jun Yu

Journal:

Genomics, Proteomics & Bioinformatics

Year:

2006

Language:

english

File:

PDF, 151 KB

english, 2006

22

Fibroblast growth factor 2 enhances Zika virus infection in human fetal brain

Limonta, Daniel, Jovel, Juan, Kumar, Anil, Lu, Julia, Hou, Shangmei, Airo, Adriana M, Lopez-Orozco, Joaquin, Wong, Cheung Pang, Saito, Leina, Branton, William, Ka-Shu Wong, Gane, Mason, Andrew, Power,

Journal:

The Journal of Infectious Diseases

Year:

2019

File:

PDF, 589 KB

2019

23

Impact of sequencing depth and technology on de novo RNA-Seq assembly

Patterson, Jordan, Carpenter, Eric J., Zhu, Zhenzhen, An, Dan, Liang, Xinming, Geng, Chunyu, Drmanac, Radoje, Wong, Gane Ka-Shu

Journal:

Year:

2019

Language:

english

File:

PDF, 1.71 MB

english, 2019

24

Skin colonization by circulating neoplastic clones in cutaneous T-cell lymphoma

Iyer, Aishwarya, Hennessey, Dylan, OâKeefe, Sandra, Patterson, Jordan, Wang, Weiwei, Wong, Gane Ka-Shu, Gniadecki, Robert

Journal:

Year:

2019

File:

PDF, 1.64 MB

2019

25

Cerebrospinal Fluid in a Small Cohort of Patients with Multiple Sclerosis Was Generally Free of Microbial DNA

Jovel, Juan, O'keefe, Sandra, Patterson, Jordan, Bording-Jorgensen, Michael, Wang, Weiwei, Mason, Andrew L., Warren, Kenneth G., Wong, Gane Ka-Shu

Journal:

Frontiers in Cellular and Infection Microbiology

Year:

2017

Language:

english

File:

PDF, 2.98 MB

english, 2017

26

High Rate of Chimeric Gene Origination by Retroposition in Plant Genomes

Wen Wang, Hongkun Zheng, Chuanzhu Fan, Jun Li, Junjie Shi, Zhengqiu Cai, Guojie Zhang, Dongyuan Liu, Jianguo Zhang, Søren Vang, Zhike Lu, Gane Ka-Shu Wong, Manyuan Long and Jun Wang

Journal:

Year:

2006

Language:

english

File:

PDF, 3.00 MB

english, 2006

27

Gα and regulator of G-protein signaling (RGS) protein pairs maintain functional compatibility and conserved interaction interfaces throughout evolution despite frequent loss of RGS proteins in plants

Hackenberg, Dieter, McKain, Michael R., Lee, Soon Goo, Roy Choudhury, Swarup, McCann, Tyler, Schreier, Spencer, Harkess, Alex, Pires, J. Chris, Wong, Gane Ka-Shu, Jez, Joseph M., Kellogg, Elizabeth A.

Journal:

New Phytologist

Year:

2016

Language:

english

File:

PDF, 2.84 MB

english, 2016

28

Clonotypic heterogeneity in cutaneous T-cell lymphoma (mycosis fungoides) revealed by comprehensive whole-exome sequencing

Iyer, Aishwarya, Hennessey, Dylan, OâKeefe, Sandra, Patterson, Jordan, Wang, Weiwei, Salopek, Thomas, Wong, Gane Ka-Shu, Gniadecki, Robert

Journal:

Year:

2019

File:

PDF, 1.70 MB

2019

29

Branched evolution and genomic intratumor heterogeneity in the pathogenesis of cutaneous T-cell lymphoma

Iyer, Aishwarya, Hennessey, Dylan, OâKeefe, Sandra, Patterson, Jordan, Wang, Weiwei, Wong, Gane Ka-Shu, Gniadecki, Robert

Journal:

Year:

2020

File:

PDF, 1.94 MB

2020

30

Assembly of High-Resolution Restriction Maps Based on Multiple Complete Digests of a Redundant Set of Overlapping Clones

Will Gillett, Liz Hanks, Gane Ka-Shu Wong, Jun Yu, Regina Lim, Maynard V. Olson

Journal:

Year:

1996

Language:

english

File:

PDF, 326 KB

english, 1996

31

The Complete Genomic Sequence of 424,015 bp at the Centromeric End of the HLA Class I Region: Gene Content and Polymorphism

Thierry Guillaudeux, Marta Janer, Gane Ka-Shu Wong, Thomas Spies and Daniel E. Geraghty

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 1.47 MB

english, 1998

32

Angiosperm Phylogeny Based on 18S/26S rDNA Sequence Data: Constructing a Large Data Set Using Next-Generation Sequence Data

Maia, Vitor H., Gitzendanner, Matthew A., Soltis, Pamela S., Wong, Gane Ka-Shu, Soltis, Douglas E.

Journal:

International Journal of Plant Sciences

Year:

2014

Language:

english

File:

PDF, 723 KB

english, 2014

33

Evolution of RLSB, a nuclear-encoded S1 domain RNA binding protein associated with post-transcriptional regulation of plastid-encoded rbcL mRNA in vascular plants

Yerramsetty, Pradeep, Stata, Matt, Siford, Rebecca, Sage, Tammy L., Sage, Rowan F., Wong, Gane Ka-Shu, Albert, Victor A., Berry, James O.

Journal:

BMC Evolutionary Biology

Year:

2016

Language:

english

File:

PDF, 2.35 MB

english, 2016

34

Mouse transcriptome: Neutral evolution of ‘non-coding’ complementary DNAs

Zheng, Hongkun, Li, Jun, Liu, Dongyuan, Li, Heng, Samudrala, Ram, Yu, Jun, Wong, Gane Ka-Shu, Wang, Jun, Zhang, Jianguo

Journal:

Year:

2004

Language:

english

File:

PDF, 176 KB

english, 2004

35

Transcriptome-Mining for Single-Copy Nuclear Markers in Ferns

Rothfels, Carl J., Larsson, Anders, Li, Fay-Wei, Sigel, Erin M., Huiet, Layne, Burge, Dylan O., Ruhsam, Markus, Graham, Sean W., Stevenson, Dennis W., Wong, Gane Ka-Shu, Korall, Petra, Pryer, Kathleen

Journal:

Year:

2013

Language:

english

File:

PDF, 1.40 MB

english, 2013

36

Mucosal Barrier Depletion And Loss Of Bacterial Diversity Are Primary Abnormalities In Paediatric Ulcerative Colitis

Alipour, Misagh, Zaidi, Deenaz, Valcheva, Rosica, Jovel, Juan, Martínez, Inés, Sergi, Consolato, Walter, Jens, Mason, Andrew L., Wong, Gane Ka-Shu, Dieleman, Levinus A., Carroll, Matthew W., Huynh, Hi

Journal:

Journal of Crohn's and Colitis

Year:

2015

Language:

english

File:

PDF, 2.28 MB

english, 2015

37

Mesophyll Chloroplast Investment in C 3 , C 4 and C 2 Species of the Genus Flaveria

Stata, Matt, Sage, Tammy L., Hoffmann, Natalie, Covshoff, Sarah, Ka-Shu Wong, Gane, Sage, Rowan F.

Journal:

Plant and Cell Physiology

Year:

2016

Language:

english

File:

PDF, 2.38 MB

english, 2016

38

Phylogenomic analysis of Ranunculales resolves branching events across the order

Lane, Amanda K, Augustin, Megan M, Ayyampalayam, Saravanaraj, Plant, Alastair, Gleissberg, Stefan, Di Stilio, Verónica S, Depamphilis, Claude W, Wong, Gane Ka-Shu, Kutchan, Toni M, Leebens-Mack, James

Journal:

Botanical Journal of the Linnean Society

Year:

2018

Language:

english

File:

PDF, 481 KB

english, 2018

39

Independent evolution of cutaneous lymphoma subclones in different microenvironments of the skin

Iyer, Aishwarya, Hennessey, Dylan, OâKeefe, Sandra, Patterson, Jordan, Wang, Weiwei, Wong, Gane Ka-Shu, Gniadecki, Robert

Journal:

Scientific Reports

Year:

2020

File:

PDF, 2.84 MB

2020

40

Challenging the paradigms of leaf evolution: Class III HD-Zips in ferns and lycophytes

Vasco, Alejandra, Smalls, Tynisha L., Graham, Sean W., Cooper, Endymion D., Wong, Gane Ka-Shu, Stevenson, Dennis W., Moran, Robbin C., Ambrose, Barbara A.

Journal:

New Phytologist

Year:

2016

Language:

english

File:

PDF, 2.63 MB

english, 2016

41

A survey of molecular heterogeneity in hepatocellular carcinoma

Jovel, Juan, Lin, Zhen, O'keefe, Sandra, Willows, Steven, Wang, Weiwei, Zhang, Guangzhi, Patterson, Jordan, Moctezuma-Velázquez, Carlos, Kelvin, David J., Ka-Shu Wong, Gane, Mason, Andrew L.

Journal:

Hepatology Communications

Year:

2018

Language:

english

File:

PDF, 1.06 MB

english, 2018

42

eLS || Protein Coding

Wong, Gane Ka-Shu

Year:

2001

Language:

english

File:

PDF, 124 KB

english, 2001

43

ReAS: Recovery of Ancestral Sequences for Transposable Elements from the Unassembled Reads of a Whole Genome Shotgun

Li, Ruiqiang, Ye, Jia, Li, Songgang, Wang, Jing, Han, Yujun, Ye, Chen, Wang, Jian, Yang, Huanming, Yu, Jun, Wong, Gane Ka-Shu, Wang, Jun

Journal:

PLoS Computational Biology

Year:

2005

Language:

english

File:

PDF, 345 KB

english, 2005

44

Origin and evolution of the nuclear auxin response system

Mutte, Sumanth K, Kato, Hirotaka, Rothfels, Carl, Melkonian, Michael, Wong, Gane Ka-Shu, Weijers, Dolf

Journal:

Year:

2018

Language:

english

File:

PDF, 4.59 MB

english, 2018

45

Metagenomics and the case of the deadly hamster

Andrew L. Mason, Karen Doucette, Gane Ka-Shu Wong

Journal:

Year:

2008

Language:

english

File:

PDF, 236 KB

english, 2008

46

RNA-Seq based phylogeny recapitulates previous phylogeny of the genus Flaveria (Asteraceae) with some modifications

Lyu, Ming-Ju Amy, Gowik, Udo, Kelly, Steve, Covshoff, Sarah, Mallmann, Julia, Westhoff, Peter, Hibberd, Julian M., Stata, Matt, Sage, Rowan F., Lu, Haorong, Wei, Xiaofeng, Wong, Gane Ka-Shu, Zhu, Xin-

Journal:

BMC Evolutionary Biology

Year:

2015

Language:

english

File:

PDF, 1.51 MB

english, 2015

47

Biological Science in China || A Comprehensive Crop Genome Research Project: The Superhybrid Rice Genome Project in China

Jun Yu, Gane Ka-Shu Wong, Siqi Liu, Jian Wang and Huanming Yang

Journal:

Philosophical Transactions Biological Sciences

Year:

2007

Language:

english

File:

PDF, 2.28 MB

english, 2007

48

Genome Biology: The Second Modern Synthesis

Yu, Jun, Wong, Gane Ka-Shu

Journal:

Genomics, Proteomics & Bioinformatics

Year:

2005

Language:

english

File:

PDF, 92 KB

english, 2005

49

10.1038/79113

Yu, Jun, Yang, Zhiyong, Ka-Shu Wong, Gane, Eberle, Michael A., Kibukawa, Miho, Passey, Douglas A., Hughes, William R., Kruglyak, Leonid

Journal:

Nature Genetics

Year:

2000

Language:

english

File:

PDF, 73 KB

english, 2000

50

Gene conversion in the rice genome

Shuqing Xu, Terry Clark, Hongkun Zheng, Søren Vang, Ruiqiang Li, Gane Ka-Shu Wong, Jun Wang, Xiaoguang Zheng

Journal:

Year:

2008

Language:

english

File:

PDF, 980 KB

english, 2008

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